A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig164932Pisum_contig164932genetic_marker
Pisum_contig071337Pisum_contig071337genetic_marker
Pisum_contig081866Pisum_contig081866genetic_marker
Pisum_contig081860Pisum_contig081860genetic_marker
Pisum_contig155704Pisum_contig155704genetic_marker
Pisum_contig177240Pisum_contig177240genetic_marker
Pisum_contig189959Pisum_contig189959genetic_marker
Pisum_contig110337Pisum_contig110337genetic_marker
Pisum_contig043942Pisum_contig043942genetic_marker
Pisum_contig081856Pisum_contig081856genetic_marker
Pisum_contig081883Pisum_contig081883genetic_marker
Pisum_contig081885Pisum_contig081885genetic_marker
Pisum_contig081886Pisum_contig081886genetic_marker
Pisum_contig110321Pisum_contig110321genetic_marker
Pisum_contig110328Pisum_contig110328genetic_marker
Pisum_contig110332Pisum_contig110332genetic_marker
Pisum_contig110334Pisum_contig110334genetic_marker
Pisum_contig127603Pisum_contig127603genetic_marker
Pisum_contig127607Pisum_contig127607genetic_marker
Pisum_contig127608Pisum_contig127608genetic_marker
Pisum_contig131142Pisum_contig131142genetic_marker
Pisum_contig131144Pisum_contig131144genetic_marker
Pisum_contig138296Pisum_contig138296genetic_marker
Pisum_contig213529Pisum_contig213529genetic_marker
Pisum_contig080775Pisum_contig080775genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States