A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig091810Pisum_contig091810genetic_marker
Pisum_contig110339Pisum_contig110339genetic_marker
Pisum_contig127604Pisum_contig127604genetic_marker
Pisum_contig131145Pisum_contig131145genetic_marker
Pisum_contig149449Pisum_contig149449genetic_marker
Pisum_contig110327Pisum_contig110327genetic_marker
Pisum_contig091807Pisum_contig091807genetic_marker
Pisum_contig043944Pisum_contig043944genetic_marker
Pisum_contig043945Pisum_contig043945genetic_marker
Pisum_contig043947Pisum_contig043947genetic_marker
Pisum_contig043949Pisum_contig043949genetic_marker
Pisum_contig081881Pisum_contig081881genetic_marker
Pisum_contig091811Pisum_contig091811genetic_marker
Pisum_contig091812Pisum_contig091812genetic_marker
Pisum_contig091825Pisum_contig091825genetic_marker
Pisum_contig091827Pisum_contig091827genetic_marker
Pisum_contig112139Pisum_contig112139genetic_marker
Pisum_contig112141Pisum_contig112141genetic_marker
Pisum_contig112143Pisum_contig112143genetic_marker
Pisum_contig112162Pisum_contig112162genetic_marker
Pisum_contig120409Pisum_contig120409genetic_marker
Pisum_contig120411Pisum_contig120411genetic_marker
Pisum_contig124903Pisum_contig124903genetic_marker
Pisum_contig124906Pisum_contig124906genetic_marker
Pisum_contig127584Pisum_contig127584genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States