A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig179689Pisum_contig179689genetic_marker
Pisum_contig169007Pisum_contig169007genetic_marker
Pisum_contig194115Pisum_contig194115genetic_marker
Pisum_contig137145Pisum_contig137145genetic_marker
Pisum_contig093952Pisum_contig093952genetic_marker
Pisum_contig198092Pisum_contig198092genetic_marker
Pisum_contig135984Pisum_contig135984genetic_marker
Pisum_contig018405Pisum_contig018405genetic_marker
Pisum_contig093931Pisum_contig093931genetic_marker
Pisum_contig093932Pisum_contig093932genetic_marker
Pisum_contig093936Pisum_contig093936genetic_marker
Pisum_contig093937Pisum_contig093937genetic_marker
Pisum_contig096572Pisum_contig096572genetic_marker
Pisum_contig115271Pisum_contig115271genetic_marker
Pisum_contig130753Pisum_contig130753genetic_marker
Pisum_contig130754Pisum_contig130754genetic_marker
Pisum_contig130756Pisum_contig130756genetic_marker
Pisum_contig130763Pisum_contig130763genetic_marker
Pisum_contig130764Pisum_contig130764genetic_marker
Pisum_contig134289Pisum_contig134289genetic_marker
Pisum_contig135977Pisum_contig135977genetic_marker
Pisum_contig137146Pisum_contig137146genetic_marker
Pisum_contig137148Pisum_contig137148genetic_marker
Pisum_contig137151Pisum_contig137151genetic_marker
Pisum_contig137159Pisum_contig137159genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States