A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig150232Pisum_contig150232genetic_marker
Pisum_contig150233Pisum_contig150233genetic_marker
Pisum_contig150234Pisum_contig150234genetic_marker
Pisum_contig174202Pisum_contig174202genetic_marker
Pisum_contig177625Pisum_contig177625genetic_marker
Pisum_contig195744Pisum_contig195744genetic_marker
Pisum_contig075791Pisum_contig075791genetic_marker
Pisum_contig121342Pisum_contig121342genetic_marker
Pisum_contig147883Pisum_contig147883genetic_marker
Pisum_contig186935Pisum_contig186935genetic_marker
Pisum_contig047762Pisum_contig047762genetic_marker
Pisum_contig147882Pisum_contig147882genetic_marker
Pisum_contig041817Pisum_contig041817genetic_marker
Pisum_contig041838Pisum_contig041838genetic_marker
Pisum_contig121343Pisum_contig121343genetic_marker
Pisum_contig125209Pisum_contig125209genetic_marker
Pisum_contig132929Pisum_contig132929genetic_marker
Pisum_contig141610Pisum_contig141610genetic_marker
Pisum_contig147874Pisum_contig147874genetic_marker
Pisum_contig186934Pisum_contig186934genetic_marker
Pisum_contig189876Pisum_contig189876genetic_marker
Pisum_contig203177Pisum_contig203177genetic_marker
Pisum_contig118722Pisum_contig118722genetic_marker
Pisum_contig174198Pisum_contig174198genetic_marker
Pisum_contig118711Pisum_contig118711genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States