A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig047458Pisum_contig047458genetic_marker
Pisum_contig127381Pisum_contig127381genetic_marker
Pisum_contig197612Pisum_contig197612genetic_marker
Pisum_contig081327Pisum_contig081327genetic_marker
Pisum_contig127363Pisum_contig127363genetic_marker
Pisum_contig180940Pisum_contig180940genetic_marker
Pisum_contig127365Pisum_contig127365genetic_marker
Pisum_contig041844Pisum_contig041844genetic_marker
Pisum_contig047460Pisum_contig047460genetic_marker
Pisum_contig075804Pisum_contig075804genetic_marker
Pisum_contig081306Pisum_contig081306genetic_marker
Pisum_contig081318Pisum_contig081318genetic_marker
Pisum_contig081332Pisum_contig081332genetic_marker
Pisum_contig127369Pisum_contig127369genetic_marker
Pisum_contig127379Pisum_contig127379genetic_marker
Pisum_contig169657Pisum_contig169657genetic_marker
Pisum_contig169663Pisum_contig169663genetic_marker
Pisum_contig177621Pisum_contig177621genetic_marker
Pisum_contig184777Pisum_contig184777genetic_marker
Pisum_contig169658Pisum_contig169658genetic_marker
Pisum_contig044221Pisum_contig044221genetic_marker
Pisum_contig062950Pisum_contig062950genetic_marker
Pisum_contig081315Pisum_contig081315genetic_marker
Pisum_contig081325Pisum_contig081325genetic_marker
Pisum_contig127364Pisum_contig127364genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States