A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig113903Pisum_contig113903genetic_marker
Pisum_contig057603Pisum_contig057603genetic_marker
Pisum_contig057587Pisum_contig057587genetic_marker
Pisum_contig057601Pisum_contig057601genetic_marker
Pisum_contig057578Pisum_contig057578genetic_marker
Pisum_contig057599Pisum_contig057599genetic_marker
Pisum_contig057606Pisum_contig057606genetic_marker
Pisum_contig057608Pisum_contig057608genetic_marker
Pisum_contig086356Pisum_contig086356genetic_marker
Pisum_contig142492Pisum_contig142492genetic_marker
Pisum_contig187527Pisum_contig187527genetic_marker
Pisum_contig142496Pisum_contig142496genetic_marker
Pisum_contig016296Pisum_contig016296genetic_marker
Pisum_contig016302Pisum_contig016302genetic_marker
Pisum_contig016308Pisum_contig016308genetic_marker
Pisum_contig022741Pisum_contig022741genetic_marker
Pisum_contig022742Pisum_contig022742genetic_marker
Pisum_contig055714Pisum_contig055714genetic_marker
Pisum_contig057581Pisum_contig057581genetic_marker
Pisum_contig057582Pisum_contig057582genetic_marker
Pisum_contig057592Pisum_contig057592genetic_marker
Pisum_contig113906Pisum_contig113906genetic_marker
Pisum_contig142493Pisum_contig142493genetic_marker
Pisum_contig142494Pisum_contig142494genetic_marker
Pisum_contig181526Pisum_contig181526genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States