A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig079231Pisum_contig079231genetic_marker
Pisum_contig079244Pisum_contig079244genetic_marker
Pisum_contig126672Pisum_contig126672genetic_marker
Pisum_contig126683Pisum_contig126683genetic_marker
Pisum_contig126685Pisum_contig126685genetic_marker
Pisum_contig134357Pisum_contig134357genetic_marker
Pisum_contig185310Pisum_contig185310genetic_marker
Pisum_contig190874Pisum_contig190874genetic_marker
Pisum_contig198668Pisum_contig198668genetic_marker
Pisum_contig208877Pisum_contig208877genetic_marker
Pisum_contig046618Pisum_contig046618genetic_marker
Pisum_contig064898Pisum_contig064898genetic_marker
Pisum_contig083859Pisum_contig083859genetic_marker
Pisum_contig158254Pisum_contig158254genetic_marker
Pisum_contig185309Pisum_contig185309genetic_marker
Pisum_contig203375Pisum_contig203375genetic_marker
Pisum_contig064903Pisum_contig064903genetic_marker
Pisum_contig179336Pisum_contig179336genetic_marker
Pisum_contig097845Pisum_contig097845genetic_marker
Pisum_contig121919Pisum_contig121919genetic_marker
Pisum_contig068662Pisum_contig068662genetic_marker
Pisum_contig068666Pisum_contig068666genetic_marker
Pisum_contig079250Pisum_contig079250genetic_marker
Pisum_contig083843Pisum_contig083843genetic_marker
Pisum_contig097841Pisum_contig097841genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States