A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig097843Pisum_contig097843genetic_marker
Pisum_contig121923Pisum_contig121923genetic_marker
Pisum_contig121925Pisum_contig121925genetic_marker
Pisum_contig146393Pisum_contig146393genetic_marker
Pisum_contig155769Pisum_contig155769genetic_marker
Pisum_contig166020Pisum_contig166020genetic_marker
Pisum_contig166022Pisum_contig166022genetic_marker
Pisum_contig166023Pisum_contig166023genetic_marker
Pisum_contig174765Pisum_contig174765genetic_marker
Pisum_contig192375Pisum_contig192375genetic_marker
Pisum_contig192377Pisum_contig192377genetic_marker
Pisum_contig192378Pisum_contig192378genetic_marker
Pisum_contig198666Pisum_contig198666genetic_marker
Pisum_contig046623Pisum_contig046623genetic_marker
Pisum_contig064920Pisum_contig064920genetic_marker
Pisum_contig064924Pisum_contig064924genetic_marker
Pisum_contig083858Pisum_contig083858genetic_marker
Pisum_contig179659Pisum_contig179659genetic_marker
Pisum_contig083848Pisum_contig083848genetic_marker
Pisum_contig121930Pisum_contig121930genetic_marker
Pisum_contig145408Pisum_contig145408genetic_marker
Pisum_contig217956Pisum_contig217956genetic_marker
Pisum_contig192380Pisum_contig192380genetic_marker
Pisum_contig198665Pisum_contig198665genetic_marker
Pisum_contig046622Pisum_contig046622genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States