A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig031132Pisum_contig031132genetic_marker
Pisum_contig031134Pisum_contig031134genetic_marker
Pisum_contig033549Pisum_contig033549genetic_marker
Pisum_contig034564Pisum_contig034564genetic_marker
Pisum_contig034565Pisum_contig034565genetic_marker
Pisum_contig034568Pisum_contig034568genetic_marker
Pisum_contig036558Pisum_contig036558genetic_marker
Pisum_contig036565Pisum_contig036565genetic_marker
Pisum_contig036568Pisum_contig036568genetic_marker
Pisum_contig036577Pisum_contig036577genetic_marker
Pisum_contig036586Pisum_contig036586genetic_marker
Pisum_contig036600Pisum_contig036600genetic_marker
Pisum_contig036609Pisum_contig036609genetic_marker
Pisum_contig042185Pisum_contig042185genetic_marker
Pisum_contig081269Pisum_contig081269genetic_marker
Pisum_contig081295Pisum_contig081295genetic_marker
Pisum_contig081305Pisum_contig081305genetic_marker
Pisum_contig103119Pisum_contig103119genetic_marker
Pisum_contig113031Pisum_contig113031genetic_marker
Pisum_contig113034Pisum_contig113034genetic_marker
Pisum_contig115382Pisum_contig115382genetic_marker
Pisum_contig132071Pisum_contig132071genetic_marker
Pisum_contig136003Pisum_contig136003genetic_marker
Pisum_contig143709Pisum_contig143709genetic_marker
Pisum_contig190885Pisum_contig190885genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States