A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig016458Pisum_contig016458genetic_marker
Pisum_contig019217Pisum_contig019217genetic_marker
Pisum_contig021852Pisum_contig021852genetic_marker
Pisum_contig021856Pisum_contig021856genetic_marker
Pisum_contig021862Pisum_contig021862genetic_marker
Pisum_contig021869Pisum_contig021869genetic_marker
Pisum_contig022937Pisum_contig022937genetic_marker
Pisum_contig022939Pisum_contig022939genetic_marker
Pisum_contig022940Pisum_contig022940genetic_marker
Pisum_contig022948Pisum_contig022948genetic_marker
Pisum_contig022955Pisum_contig022955genetic_marker
Pisum_contig023627Pisum_contig023627genetic_marker
Pisum_contig025745Pisum_contig025745genetic_marker
Pisum_contig028712Pisum_contig028712genetic_marker
Pisum_contig028719Pisum_contig028719genetic_marker
Pisum_contig028835Pisum_contig028835genetic_marker
Pisum_contig028848Pisum_contig028848genetic_marker
Pisum_contig028850Pisum_contig028850genetic_marker
Pisum_contig028851Pisum_contig028851genetic_marker
Pisum_contig028857Pisum_contig028857genetic_marker
Pisum_contig034584Pisum_contig034584genetic_marker
Pisum_contig034586Pisum_contig034586genetic_marker
Pisum_contig034588Pisum_contig034588genetic_marker
Pisum_contig035167Pisum_contig035167genetic_marker
Pisum_contig035182Pisum_contig035182genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States