A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig044243Pisum_contig044243genetic_marker
Pisum_contig044248Pisum_contig044248genetic_marker
Pisum_contig044265Pisum_contig044265genetic_marker
Pisum_contig044866Pisum_contig044866genetic_marker
Pisum_contig044896Pisum_contig044896genetic_marker
Pisum_contig049265Pisum_contig049265genetic_marker
Pisum_contig050688Pisum_contig050688genetic_marker
Pisum_contig051353Pisum_contig051353genetic_marker
Pisum_contig051592Pisum_contig051592genetic_marker
Pisum_contig052520Pisum_contig052520genetic_marker
Pisum_contig052522Pisum_contig052522genetic_marker
Pisum_contig052533Pisum_contig052533genetic_marker
Pisum_contig054282Pisum_contig054282genetic_marker
Pisum_contig056322Pisum_contig056322genetic_marker
Pisum_contig057251Pisum_contig057251genetic_marker
Pisum_contig057266Pisum_contig057266genetic_marker
Pisum_contig059784Pisum_contig059784genetic_marker
Pisum_contig059820Pisum_contig059820genetic_marker
Pisum_contig061274Pisum_contig061274genetic_marker
Pisum_contig063071Pisum_contig063071genetic_marker
Pisum_contig063072Pisum_contig063072genetic_marker
Pisum_contig064281Pisum_contig064281genetic_marker
Pisum_contig064294Pisum_contig064294genetic_marker
Pisum_contig067099Pisum_contig067099genetic_marker
Pisum_contig069478Pisum_contig069478genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States