A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig208187Pisum_contig208187genetic_marker
Pisum_contig046909Pisum_contig046909genetic_marker
Pisum_contig000207Pisum_contig000207genetic_marker
Pisum_contig001040Pisum_contig001040genetic_marker
Pisum_contig022284Pisum_contig022284genetic_marker
Pisum_contig051670Pisum_contig051670genetic_marker
Pisum_contig057256Pisum_contig057256genetic_marker
Pisum_contig063056Pisum_contig063056genetic_marker
Pisum_contig063069Pisum_contig063069genetic_marker
Pisum_contig079015Pisum_contig079015genetic_marker
Pisum_contig116636Pisum_contig116636genetic_marker
Pisum_contig192899Pisum_contig192899genetic_marker
Pisum_contig000225Pisum_contig000225genetic_marker
Pisum_contig011803Pisum_contig011803genetic_marker
Pisum_contig028862Pisum_contig028862genetic_marker
Pisum_contig052543Pisum_contig052543genetic_marker
Pisum_contig057289Pisum_contig057289genetic_marker
Pisum_contig069524Pisum_contig069524genetic_marker
Pisum_contig069527Pisum_contig069527genetic_marker
Pisum_contig077180Pisum_contig077180genetic_marker
Pisum_contig083702Pisum_contig083702genetic_marker
Pisum_contig094066Pisum_contig094066genetic_marker
Pisum_contig101639Pisum_contig101639genetic_marker
Pisum_contig117438Pisum_contig117438genetic_marker
Pisum_contig126696Pisum_contig126696genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States