A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig124749Pisum_contig124749genetic_marker
Pisum_contig124754Pisum_contig124754genetic_marker
Pisum_contig130805Pisum_contig130805genetic_marker
Pisum_contig137213Pisum_contig137213genetic_marker
Pisum_contig143815Pisum_contig143815genetic_marker
Pisum_contig158025Pisum_contig158025genetic_marker
Pisum_contig166702Pisum_contig166702genetic_marker
Pisum_contig175280Pisum_contig175280genetic_marker
Pisum_contig184029Pisum_contig184029genetic_marker
Pisum_contig186490Pisum_contig186490genetic_marker
Pisum_contig195978Pisum_contig195978genetic_marker
Pisum_contig196927Pisum_contig196927genetic_marker
Pisum_contig202967Pisum_contig202967genetic_marker
Pisum_contig213065Pisum_contig213065genetic_marker
Pisum_contig001036Pisum_contig001036genetic_marker
Pisum_contig001057Pisum_contig001057genetic_marker
Pisum_contig003291Pisum_contig003291genetic_marker
Pisum_contig005500Pisum_contig005500genetic_marker
Pisum_contig015566Pisum_contig015566genetic_marker
Pisum_contig019224Pisum_contig019224genetic_marker
Pisum_contig023629Pisum_contig023629genetic_marker
Pisum_contig025694Pisum_contig025694genetic_marker
Pisum_contig025712Pisum_contig025712genetic_marker
Pisum_contig028708Pisum_contig028708genetic_marker
Pisum_contig032073Pisum_contig032073genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States