A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig061040Pisum_contig061040genetic_marker
Pisum_contig061055Pisum_contig061055genetic_marker
Pisum_contig062170Pisum_contig062170genetic_marker
Pisum_contig062173Pisum_contig062173genetic_marker
Pisum_contig074958Pisum_contig074958genetic_marker
Pisum_contig074961Pisum_contig074961genetic_marker
Pisum_contig089714Pisum_contig089714genetic_marker
Pisum_contig100059Pisum_contig100059genetic_marker
Pisum_contig112424Pisum_contig112424genetic_marker
Pisum_contig132091Pisum_contig132091genetic_marker
Pisum_contig143813Pisum_contig143813genetic_marker
Pisum_contig147718Pisum_contig147718genetic_marker
Pisum_contig163445Pisum_contig163445genetic_marker
Pisum_contig163451Pisum_contig163451genetic_marker
Pisum_contig166001Pisum_contig166001genetic_marker
Pisum_contig196872Pisum_contig196872genetic_marker
Pisum_contig026636Pisum_contig026636genetic_marker
Pisum_contig027988Pisum_contig027988genetic_marker
Pisum_contig027994Pisum_contig027994genetic_marker
Pisum_contig041359Pisum_contig041359genetic_marker
Pisum_contig069757Pisum_contig069757genetic_marker
Pisum_contig074957Pisum_contig074957genetic_marker
Pisum_contig100060Pisum_contig100060genetic_marker
Pisum_contig118521Pisum_contig118521genetic_marker
Pisum_contig121305Pisum_contig121305genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States