A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig051305Pisum_contig051305genetic_marker
Pisum_contig051307Pisum_contig051307genetic_marker
Pisum_contig051308Pisum_contig051308genetic_marker
Pisum_contig051326Pisum_contig051326genetic_marker
Pisum_contig051327Pisum_contig051327genetic_marker
Pisum_contig060022Pisum_contig060022genetic_marker
Pisum_contig060024Pisum_contig060024genetic_marker
Pisum_contig064206Pisum_contig064206genetic_marker
Pisum_contig064207Pisum_contig064207genetic_marker
Pisum_contig064211Pisum_contig064211genetic_marker
Pisum_contig064216Pisum_contig064216genetic_marker
Pisum_contig064217Pisum_contig064217genetic_marker
Pisum_contig064220Pisum_contig064220genetic_marker
Pisum_contig064227Pisum_contig064227genetic_marker
Pisum_contig074118Pisum_contig074118genetic_marker
Pisum_contig074120Pisum_contig074120genetic_marker
Pisum_contig078902Pisum_contig078902genetic_marker
Pisum_contig078904Pisum_contig078904genetic_marker
Pisum_contig078906Pisum_contig078906genetic_marker
Pisum_contig078908Pisum_contig078908genetic_marker
Pisum_contig084783Pisum_contig084783genetic_marker
Pisum_contig096323Pisum_contig096323genetic_marker
Pisum_contig096327Pisum_contig096327genetic_marker
Pisum_contig096332Pisum_contig096332genetic_marker
Pisum_contig121785Pisum_contig121785genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States