A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig044396Pisum_contig044396genetic_marker
Pisum_contig063707Pisum_contig063707genetic_marker
Pisum_contig063710Pisum_contig063710genetic_marker
Pisum_contig063713Pisum_contig063713genetic_marker
Pisum_contig067982Pisum_contig067982genetic_marker
Pisum_contig067988Pisum_contig067988genetic_marker
Pisum_contig067992Pisum_contig067992genetic_marker
Pisum_contig068001Pisum_contig068001genetic_marker
Pisum_contig068006Pisum_contig068006genetic_marker
Pisum_contig068013Pisum_contig068013genetic_marker
Pisum_contig068015Pisum_contig068015genetic_marker
Pisum_contig180387Pisum_contig180387genetic_marker
Pisum_contig180389Pisum_contig180389genetic_marker
Pisum_contig185323Pisum_contig185323genetic_marker
Pisum_contig185324Pisum_contig185324genetic_marker
Pisum_contig197198Pisum_contig197198genetic_marker
Pisum_contig021786Pisum_contig021786genetic_marker
Pisum_contig033088Pisum_contig033088genetic_marker
Pisum_contig140661Pisum_contig140661genetic_marker
Pisum_contig029648Pisum_contig029648genetic_marker
Pisum_contig029649Pisum_contig029649genetic_marker
Pisum_contig029659Pisum_contig029659genetic_marker
Pisum_contig029661Pisum_contig029661genetic_marker
Pisum_contig029662Pisum_contig029662genetic_marker
Pisum_contig029664Pisum_contig029664genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States