A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig029671Pisum_contig029671genetic_marker
Pisum_contig029675Pisum_contig029675genetic_marker
Pisum_contig031718Pisum_contig031718genetic_marker
Pisum_contig033083Pisum_contig033083genetic_marker
Pisum_contig044404Pisum_contig044404genetic_marker
Pisum_contig051725Pisum_contig051725genetic_marker
Pisum_contig051729Pisum_contig051729genetic_marker
Pisum_contig067990Pisum_contig067990genetic_marker
Pisum_contig099519Pisum_contig099519genetic_marker
Pisum_contig102368Pisum_contig102368genetic_marker
Pisum_contig120762Pisum_contig120762genetic_marker
Pisum_contig120763Pisum_contig120763genetic_marker
Pisum_contig120767Pisum_contig120767genetic_marker
Pisum_contig120771Pisum_contig120771genetic_marker
Pisum_contig140649Pisum_contig140649genetic_marker
Pisum_contig140650Pisum_contig140650genetic_marker
Pisum_contig140652Pisum_contig140652genetic_marker
Pisum_contig140654Pisum_contig140654genetic_marker
Pisum_contig140656Pisum_contig140656genetic_marker
Pisum_contig140663Pisum_contig140663genetic_marker
Pisum_contig170453Pisum_contig170453genetic_marker
Pisum_contig170459Pisum_contig170459genetic_marker
Pisum_contig184637Pisum_contig184637genetic_marker
Pisum_contig184638Pisum_contig184638genetic_marker
Pisum_contig194465Pisum_contig194465genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States