A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig123305Pisum_contig123305genetic_marker
Pisum_contig123307Pisum_contig123307genetic_marker
Pisum_contig123313Pisum_contig123313genetic_marker
Pisum_contig135405Pisum_contig135405genetic_marker
Pisum_contig135412Pisum_contig135412genetic_marker
Pisum_contig135417Pisum_contig135417genetic_marker
Pisum_contig135420Pisum_contig135420genetic_marker
Pisum_contig144480Pisum_contig144480genetic_marker
Pisum_contig147852Pisum_contig147852genetic_marker
Pisum_contig173098Pisum_contig173098genetic_marker
Pisum_contig175428Pisum_contig175428genetic_marker
Pisum_contig176990Pisum_contig176990genetic_marker
Pisum_contig176991Pisum_contig176991genetic_marker
Pisum_contig177148Pisum_contig177148genetic_marker
Pisum_contig183844Pisum_contig183844genetic_marker
Pisum_contig193952Pisum_contig193952genetic_marker
Pisum_contig196452Pisum_contig196452genetic_marker
Pisum_contig196454Pisum_contig196454genetic_marker
Pisum_contig217325Pisum_contig217325genetic_marker
Pisum_contig046788Pisum_contig046788genetic_marker
Pisum_contig172518Pisum_contig172518genetic_marker
Pisum_contig146454Pisum_contig146454genetic_marker
Pisum_contig146455Pisum_contig146455genetic_marker
Pisum_contig177042Pisum_contig177042genetic_marker
Pisum_contig146460Pisum_contig146460genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States