A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig078174Pisum_contig078174genetic_marker
Pisum_contig078175Pisum_contig078175genetic_marker
Pisum_contig081536Pisum_contig081536genetic_marker
Pisum_contig081545Pisum_contig081545genetic_marker
Pisum_contig081549Pisum_contig081549genetic_marker
Pisum_contig096762Pisum_contig096762genetic_marker
Pisum_contig096765Pisum_contig096765genetic_marker
Pisum_contig096768Pisum_contig096768genetic_marker
Pisum_contig096769Pisum_contig096769genetic_marker
Pisum_contig107942Pisum_contig107942genetic_marker
Pisum_contig123314Pisum_contig123314genetic_marker
Pisum_contig146443Pisum_contig146443genetic_marker
Pisum_contig146445Pisum_contig146445genetic_marker
Pisum_contig146446Pisum_contig146446genetic_marker
Pisum_contig146450Pisum_contig146450genetic_marker
Pisum_contig146453Pisum_contig146453genetic_marker
Pisum_contig146456Pisum_contig146456genetic_marker
Pisum_contig173095Pisum_contig173095genetic_marker
Pisum_contig173097Pisum_contig173097genetic_marker
Pisum_contig177043Pisum_contig177043genetic_marker
Pisum_contig177149Pisum_contig177149genetic_marker
Pisum_contig183841Pisum_contig183841genetic_marker
Pisum_contig183842Pisum_contig183842genetic_marker
Pisum_contig183843Pisum_contig183843genetic_marker
Pisum_contig217943Pisum_contig217943genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States