A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig052180Pisum_contig052180genetic_marker
Pisum_contig052184Pisum_contig052184genetic_marker
Pisum_contig057886Pisum_contig057886genetic_marker
Pisum_contig057887Pisum_contig057887genetic_marker
Pisum_contig057891Pisum_contig057891genetic_marker
Pisum_contig057892Pisum_contig057892genetic_marker
Pisum_contig059686Pisum_contig059686genetic_marker
Pisum_contig060168Pisum_contig060168genetic_marker
Pisum_contig066367Pisum_contig066367genetic_marker
Pisum_contig066369Pisum_contig066369genetic_marker
Pisum_contig066370Pisum_contig066370genetic_marker
Pisum_contig080144Pisum_contig080144genetic_marker
Pisum_contig080153Pisum_contig080153genetic_marker
Pisum_contig086152Pisum_contig086152genetic_marker
Pisum_contig086156Pisum_contig086156genetic_marker
Pisum_contig086158Pisum_contig086158genetic_marker
Pisum_contig086169Pisum_contig086169genetic_marker
Pisum_contig099947Pisum_contig099947genetic_marker
Pisum_contig100143Pisum_contig100143genetic_marker
Pisum_contig100147Pisum_contig100147genetic_marker
Pisum_contig100152Pisum_contig100152genetic_marker
Pisum_contig100157Pisum_contig100157genetic_marker
Pisum_contig102877Pisum_contig102877genetic_marker
Pisum_contig112500Pisum_contig112500genetic_marker
Pisum_contig125570Pisum_contig125570genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States