A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig183861Pisum_contig183861genetic_marker
Pisum_contig184010Pisum_contig184010genetic_marker
Pisum_contig202197Pisum_contig202197genetic_marker
Pisum_contig047512Pisum_contig047512genetic_marker
Pisum_contig003058Pisum_contig003058genetic_marker
Pisum_contig019453Pisum_contig019453genetic_marker
Pisum_contig022506Pisum_contig022506genetic_marker
Pisum_contig022508Pisum_contig022508genetic_marker
Pisum_contig022509Pisum_contig022509genetic_marker
Pisum_contig022511Pisum_contig022511genetic_marker
Pisum_contig022514Pisum_contig022514genetic_marker
Pisum_contig022516Pisum_contig022516genetic_marker
Pisum_contig022530Pisum_contig022530genetic_marker
Pisum_contig022532Pisum_contig022532genetic_marker
Pisum_contig022535Pisum_contig022535genetic_marker
Pisum_contig023673Pisum_contig023673genetic_marker
Pisum_contig024204Pisum_contig024204genetic_marker
Pisum_contig024228Pisum_contig024228genetic_marker
Pisum_contig024229Pisum_contig024229genetic_marker
Pisum_contig024230Pisum_contig024230genetic_marker
Pisum_contig024231Pisum_contig024231genetic_marker
Pisum_contig024239Pisum_contig024239genetic_marker
Pisum_contig024252Pisum_contig024252genetic_marker
Pisum_contig029738Pisum_contig029738genetic_marker
Pisum_contig029740Pisum_contig029740genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States