A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig129301Pisum_contig129301genetic_marker
Pisum_contig141763Pisum_contig141763genetic_marker
Pisum_contig189805Pisum_contig189805genetic_marker
Pisum_contig079945Pisum_contig079945genetic_marker
Pisum_contig028764Pisum_contig028764genetic_marker
Pisum_contig079961Pisum_contig079961genetic_marker
Pisum_contig079951Pisum_contig079951genetic_marker
Pisum_contig024212Pisum_contig024212genetic_marker
Pisum_contig024244Pisum_contig024244genetic_marker
Pisum_contig028759Pisum_contig028759genetic_marker
Pisum_contig029724Pisum_contig029724genetic_marker
Pisum_contig129588Pisum_contig129588genetic_marker
Pisum_contig028760Pisum_contig028760genetic_marker
Pisum_contig029723Pisum_contig029723genetic_marker
Pisum_contig041549Pisum_contig041549genetic_marker
Pisum_contig096634Pisum_contig096634genetic_marker
Pisum_contig079959Pisum_contig079959genetic_marker
Pisum_contig096630Pisum_contig096630genetic_marker
Pisum_contig096635Pisum_contig096635genetic_marker
Pisum_contig175276Pisum_contig175276genetic_marker
Pisum_contig096629Pisum_contig096629genetic_marker
Pisum_contig123481Pisum_contig123481genetic_marker
Pisum_contig152116Pisum_contig152116genetic_marker
Pisum_contig003056Pisum_contig003056genetic_marker
Pisum_contig079936Pisum_contig079936genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States