A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig066408Pisum_contig066408genetic_marker
Pisum_contig066419Pisum_contig066419genetic_marker
Pisum_contig066432Pisum_contig066432genetic_marker
Pisum_contig095171Pisum_contig095171genetic_marker
Pisum_contig095173Pisum_contig095173genetic_marker
Pisum_contig197196Pisum_contig197196genetic_marker
Pisum_contig066413Pisum_contig066413genetic_marker
Pisum_contig066431Pisum_contig066431genetic_marker
Pisum_contig073082Pisum_contig073082genetic_marker
Pisum_contig073084Pisum_contig073084genetic_marker
Pisum_contig073092Pisum_contig073092genetic_marker
Pisum_contig095188Pisum_contig095188genetic_marker
Pisum_contig105779Pisum_contig105779genetic_marker
Pisum_contig110286Pisum_contig110286genetic_marker
Pisum_contig008445Pisum_contig008445genetic_marker
Pisum_contig102974Pisum_contig102974genetic_marker
Pisum_contig067373Pisum_contig067373genetic_marker
Pisum_contig073086Pisum_contig073086genetic_marker
Pisum_contig194657Pisum_contig194657genetic_marker
Pisum_contig058007Pisum_contig058007genetic_marker
Pisum_contig066409Pisum_contig066409genetic_marker
Pisum_contig066412Pisum_contig066412genetic_marker
Pisum_contig095172Pisum_contig095172genetic_marker
Pisum_contig105799Pisum_contig105799genetic_marker
Pisum_contig159904Pisum_contig159904genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States