A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig003726Pisum_contig003726genetic_marker
Pisum_contig003728Pisum_contig003728genetic_marker
Pisum_contig003730Pisum_contig003730genetic_marker
Pisum_contig058993Pisum_contig058993genetic_marker
Pisum_contig058994Pisum_contig058994genetic_marker
Pisum_contig058997Pisum_contig058997genetic_marker
Pisum_contig058998Pisum_contig058998genetic_marker
Pisum_contig059004Pisum_contig059004genetic_marker
Pisum_contig059005Pisum_contig059005genetic_marker
Pisum_contig059007Pisum_contig059007genetic_marker
Pisum_contig059008Pisum_contig059008genetic_marker
Pisum_contig059011Pisum_contig059011genetic_marker
Pisum_contig059012Pisum_contig059012genetic_marker
Pisum_contig059013Pisum_contig059013genetic_marker
Pisum_contig059024Pisum_contig059024genetic_marker
Pisum_contig059026Pisum_contig059026genetic_marker
Pisum_contig101884Pisum_contig101884genetic_marker
Pisum_contig101887Pisum_contig101887genetic_marker
Pisum_contig101888Pisum_contig101888genetic_marker
Pisum_contig101890Pisum_contig101890genetic_marker
Pisum_contig134555Pisum_contig134555genetic_marker
Pisum_contig134559Pisum_contig134559genetic_marker
Pisum_contig134975Pisum_contig134975genetic_marker
Pisum_contig134976Pisum_contig134976genetic_marker
Pisum_contig134979Pisum_contig134979genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States