A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig040865Pisum_contig040865genetic_marker
Pisum_contig040866Pisum_contig040866genetic_marker
Pisum_contig040868Pisum_contig040868genetic_marker
Pisum_contig040872Pisum_contig040872genetic_marker
Pisum_contig040873Pisum_contig040873genetic_marker
Pisum_contig040874Pisum_contig040874genetic_marker
Pisum_contig040880Pisum_contig040880genetic_marker
Pisum_contig040881Pisum_contig040881genetic_marker
Pisum_contig040883Pisum_contig040883genetic_marker
Pisum_contig040889Pisum_contig040889genetic_marker
Pisum_contig040890Pisum_contig040890genetic_marker
Pisum_contig040893Pisum_contig040893genetic_marker
Pisum_contig040894Pisum_contig040894genetic_marker
Pisum_contig042246Pisum_contig042246genetic_marker
Pisum_contig042249Pisum_contig042249genetic_marker
Pisum_contig042252Pisum_contig042252genetic_marker
Pisum_contig042253Pisum_contig042253genetic_marker
Pisum_contig042255Pisum_contig042255genetic_marker
Pisum_contig042259Pisum_contig042259genetic_marker
Pisum_contig042260Pisum_contig042260genetic_marker
Pisum_contig042265Pisum_contig042265genetic_marker
Pisum_contig042266Pisum_contig042266genetic_marker
Pisum_contig042271Pisum_contig042271genetic_marker
Pisum_contig087503Pisum_contig087503genetic_marker
Pisum_contig099603Pisum_contig099603genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States