A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig084547Pisum_contig084547genetic_marker
Pisum_contig139134Pisum_contig139134genetic_marker
Pisum_contig164710Pisum_contig164710genetic_marker
Pisum_contig008720Pisum_contig008720genetic_marker
Pisum_contig040854Pisum_contig040854genetic_marker
Pisum_contig081919Pisum_contig081919genetic_marker
Pisum_contig122386Pisum_contig122386genetic_marker
Pisum_contig180483Pisum_contig180483genetic_marker
Pisum_contig062800Pisum_contig062800genetic_marker
Pisum_contig112028Pisum_contig112028genetic_marker
Pisum_contig150427Pisum_contig150427genetic_marker
Pisum_contig008748Pisum_contig008748genetic_marker
Pisum_contig112040Pisum_contig112040genetic_marker
Pisum_contig122401Pisum_contig122401genetic_marker
Pisum_contig143650Pisum_contig143650genetic_marker
Pisum_contig161227Pisum_contig161227genetic_marker
Pisum_contig081918Pisum_contig081918genetic_marker
Pisum_contig143668Pisum_contig143668genetic_marker
Pisum_contig026928Pisum_contig026928genetic_marker
Pisum_contig051779Pisum_contig051779genetic_marker
Pisum_contig143652Pisum_contig143652genetic_marker
Pisum_contig026953Pisum_contig026953genetic_marker
Pisum_contig084535Pisum_contig084535genetic_marker
Pisum_contig084548Pisum_contig084548genetic_marker
Pisum_contig130605Pisum_contig130605genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States