A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig054074Pisum_contig054074genetic_marker
Pisum_contig120458Pisum_contig120458genetic_marker
Pisum_contig120459Pisum_contig120459genetic_marker
Pisum_contig136207Pisum_contig136207genetic_marker
Pisum_contig213455Pisum_contig213455genetic_marker
Pisum_contig009511Pisum_contig009511genetic_marker
Pisum_contig009515Pisum_contig009515genetic_marker
Pisum_contig009569Pisum_contig009569genetic_marker
Pisum_contig030821Pisum_contig030821genetic_marker
Pisum_contig086018Pisum_contig086018genetic_marker
Pisum_contig054082Pisum_contig054082genetic_marker
Pisum_contig116646Pisum_contig116646genetic_marker
Pisum_contig133554Pisum_contig133554genetic_marker
Pisum_contig136191Pisum_contig136191genetic_marker
Pisum_contig136192Pisum_contig136192genetic_marker
Pisum_contig141839Pisum_contig141839genetic_marker
Pisum_contig030808Pisum_contig030808genetic_marker
Pisum_contig053228Pisum_contig053228genetic_marker
Pisum_contig129997Pisum_contig129997genetic_marker
Pisum_contig018279Pisum_contig018279genetic_marker
Pisum_contig141841Pisum_contig141841genetic_marker
Pisum_contig141842Pisum_contig141842genetic_marker
Pisum_contig035765Pisum_contig035765genetic_marker
Pisum_contig030820Pisum_contig030820genetic_marker
Pisum_contig069669Pisum_contig069669genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States