A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig018261Pisum_contig018261genetic_marker
Pisum_contig018262Pisum_contig018262genetic_marker
Pisum_contig018263Pisum_contig018263genetic_marker
Pisum_contig018265Pisum_contig018265genetic_marker
Pisum_contig018270Pisum_contig018270genetic_marker
Pisum_contig018277Pisum_contig018277genetic_marker
Pisum_contig054036Pisum_contig054036genetic_marker
Pisum_contig054039Pisum_contig054039genetic_marker
Pisum_contig054042Pisum_contig054042genetic_marker
Pisum_contig054059Pisum_contig054059genetic_marker
Pisum_contig054073Pisum_contig054073genetic_marker
Pisum_contig054078Pisum_contig054078genetic_marker
Pisum_contig079417Pisum_contig079417genetic_marker
Pisum_contig088264Pisum_contig088264genetic_marker
Pisum_contig094284Pisum_contig094284genetic_marker
Pisum_contig094286Pisum_contig094286genetic_marker
Pisum_contig094287Pisum_contig094287genetic_marker
Pisum_contig094292Pisum_contig094292genetic_marker
Pisum_contig094293Pisum_contig094293genetic_marker
Pisum_contig094298Pisum_contig094298genetic_marker
Pisum_contig100386Pisum_contig100386genetic_marker
Pisum_contig107774Pisum_contig107774genetic_marker
Pisum_contig115890Pisum_contig115890genetic_marker
Pisum_contig115891Pisum_contig115891genetic_marker
Pisum_contig115892Pisum_contig115892genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States