A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig076151Pisum_contig076151genetic_marker
Pisum_contig076156Pisum_contig076156genetic_marker
Pisum_contig076159Pisum_contig076159genetic_marker
Pisum_contig093574Pisum_contig093574genetic_marker
Pisum_contig098072Pisum_contig098072genetic_marker
Pisum_contig098096Pisum_contig098096genetic_marker
Pisum_contig098097Pisum_contig098097genetic_marker
Pisum_contig135223Pisum_contig135223genetic_marker
Pisum_contig135237Pisum_contig135237genetic_marker
Pisum_contig152547Pisum_contig152547genetic_marker
Pisum_contig152550Pisum_contig152550genetic_marker
Pisum_contig152555Pisum_contig152555genetic_marker
Pisum_contig165794Pisum_contig165794genetic_marker
Pisum_contig195300Pisum_contig195300genetic_marker
Pisum_contig104519Pisum_contig104519genetic_marker
Pisum_contig076164Pisum_contig076164genetic_marker
Pisum_contig104512Pisum_contig104512genetic_marker
Pisum_contig104521Pisum_contig104521genetic_marker
Pisum_contig104522Pisum_contig104522genetic_marker
Pisum_contig104524Pisum_contig104524genetic_marker
Pisum_contig104526Pisum_contig104526genetic_marker
Pisum_contig104527Pisum_contig104527genetic_marker
Pisum_contig165795Pisum_contig165795genetic_marker
Pisum_contig165798Pisum_contig165798genetic_marker
Pisum_contig165799Pisum_contig165799genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States