A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig140238Pisum_contig140238genetic_marker
Pisum_contig140247Pisum_contig140247genetic_marker
Pisum_contig147029Pisum_contig147029genetic_marker
Pisum_contig147031Pisum_contig147031genetic_marker
Pisum_contig147032Pisum_contig147032genetic_marker
Pisum_contig165235Pisum_contig165235genetic_marker
Pisum_contig185401Pisum_contig185401genetic_marker
Pisum_contig185811Pisum_contig185811genetic_marker
Pisum_contig185816Pisum_contig185816genetic_marker
Pisum_contig192646Pisum_contig192646genetic_marker
Pisum_contig192648Pisum_contig192648genetic_marker
Pisum_contig005703Pisum_contig005703genetic_marker
Pisum_contig019688Pisum_contig019688genetic_marker
Pisum_contig030754Pisum_contig030754genetic_marker
Pisum_contig030775Pisum_contig030775genetic_marker
Pisum_contig030784Pisum_contig030784genetic_marker
Pisum_contig073288Pisum_contig073288genetic_marker
Pisum_contig139995Pisum_contig139995genetic_marker
Pisum_contig147040Pisum_contig147040genetic_marker
Pisum_contig001333Pisum_contig001333genetic_marker
Pisum_contig001337Pisum_contig001337genetic_marker
Pisum_contig030762Pisum_contig030762genetic_marker
Pisum_contig030765Pisum_contig030765genetic_marker
Pisum_contig030773Pisum_contig030773genetic_marker
Pisum_contig030779Pisum_contig030779genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States