A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig045233Pisum_contig045233genetic_marker
Pisum_contig111022Pisum_contig111022genetic_marker
Pisum_contig115653Pisum_contig115653genetic_marker
Pisum_contig126260Pisum_contig126260genetic_marker
Pisum_contig146860Pisum_contig146860genetic_marker
Pisum_contig154372Pisum_contig154372genetic_marker
Pisum_contig154373Pisum_contig154373genetic_marker
Pisum_contig158972Pisum_contig158972genetic_marker
Pisum_contig158975Pisum_contig158975genetic_marker
Pisum_contig136963Pisum_contig136963genetic_marker
Pisum_contig023229Pisum_contig023229genetic_marker
Pisum_contig023240Pisum_contig023240genetic_marker
Pisum_contig023243Pisum_contig023243genetic_marker
Pisum_contig045264Pisum_contig045264genetic_marker
Pisum_contig067404Pisum_contig067404genetic_marker
Pisum_contig068039Pisum_contig068039genetic_marker
Pisum_contig071816Pisum_contig071816genetic_marker
Pisum_contig111024Pisum_contig111024genetic_marker
Pisum_contig150921Pisum_contig150921genetic_marker
Pisum_contig191510Pisum_contig191510genetic_marker
Pisum_contig197888Pisum_contig197888genetic_marker
Pisum_contig023234Pisum_contig023234genetic_marker
Pisum_contig111027Pisum_contig111027genetic_marker
Pisum_contig164830Pisum_contig164830genetic_marker
Pisum_contig196247Pisum_contig196247genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States