A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig130708Pisum_contig130708genetic_marker
Pisum_contig130713Pisum_contig130713genetic_marker
Pisum_contig156902Pisum_contig156902genetic_marker
Pisum_contig182699Pisum_contig182699genetic_marker
Pisum_contig182856Pisum_contig182856genetic_marker
Pisum_contig183823Pisum_contig183823genetic_marker
Pisum_contig182704Pisum_contig182704genetic_marker
Pisum_contig032881Pisum_contig032881genetic_marker
Pisum_contig032854Pisum_contig032854genetic_marker
Pisum_contig032864Pisum_contig032864genetic_marker
Pisum_contig032882Pisum_contig032882genetic_marker
Pisum_contig032885Pisum_contig032885genetic_marker
Pisum_contig073486Pisum_contig073486genetic_marker
Pisum_contig073489Pisum_contig073489genetic_marker
Pisum_contig116975Pisum_contig116975genetic_marker
Pisum_contig135684Pisum_contig135684genetic_marker
Pisum_contig135695Pisum_contig135695genetic_marker
Pisum_contig191506Pisum_contig191506genetic_marker
Pisum_contig126256Pisum_contig126256genetic_marker
Pisum_contig182698Pisum_contig182698genetic_marker
Pisum_contig182701Pisum_contig182701genetic_marker
Pisum_contig205960Pisum_contig205960genetic_marker
Pisum_contig182700Pisum_contig182700genetic_marker
Pisum_contig037839Pisum_contig037839genetic_marker
Pisum_contig134770Pisum_contig134770genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States