A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig037803Pisum_contig037803genetic_marker
Pisum_contig037849Pisum_contig037849genetic_marker
Pisum_contig136329Pisum_contig136329genetic_marker
Pisum_contig137107Pisum_contig137107genetic_marker
Pisum_contig140533Pisum_contig140533genetic_marker
Pisum_contig155004Pisum_contig155004genetic_marker
Pisum_contig106909Pisum_contig106909genetic_marker
Pisum_contig022000Pisum_contig022000genetic_marker
Pisum_contig037804Pisum_contig037804genetic_marker
Pisum_contig063249Pisum_contig063249genetic_marker
Pisum_contig084079Pisum_contig084079genetic_marker
Pisum_contig084092Pisum_contig084092genetic_marker
Pisum_contig106913Pisum_contig106913genetic_marker
Pisum_contig106915Pisum_contig106915genetic_marker
Pisum_contig106923Pisum_contig106923genetic_marker
Pisum_contig120253Pisum_contig120253genetic_marker
Pisum_contig134966Pisum_contig134966genetic_marker
Pisum_contig136326Pisum_contig136326genetic_marker
Pisum_contig137073Pisum_contig137073genetic_marker
Pisum_contig145200Pisum_contig145200genetic_marker
Pisum_contig148822Pisum_contig148822genetic_marker
Pisum_contig157747Pisum_contig157747genetic_marker
Pisum_contig159410Pisum_contig159410genetic_marker
Pisum_contig049624Pisum_contig049624genetic_marker
Pisum_contig175900Pisum_contig175900genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States