A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig014149Pisum_contig014149genetic_marker
Pisum_contig022004Pisum_contig022004genetic_marker
Pisum_contig042960Pisum_contig042960genetic_marker
Pisum_contig084087Pisum_contig084087genetic_marker
Pisum_contig106920Pisum_contig106920genetic_marker
Pisum_contig106924Pisum_contig106924genetic_marker
Pisum_contig106928Pisum_contig106928genetic_marker
Pisum_contig111174Pisum_contig111174genetic_marker
Pisum_contig133074Pisum_contig133074genetic_marker
Pisum_contig133086Pisum_contig133086genetic_marker
Pisum_contig146141Pisum_contig146141genetic_marker
Pisum_contig146297Pisum_contig146297genetic_marker
Pisum_contig149002Pisum_contig149002genetic_marker
Pisum_contig162688Pisum_contig162688genetic_marker
Pisum_contig167361Pisum_contig167361genetic_marker
Pisum_contig175901Pisum_contig175901genetic_marker
Pisum_contig084083Pisum_contig084083genetic_marker
Pisum_contig135685Pisum_contig135685genetic_marker
Pisum_contig142928Pisum_contig142928genetic_marker
Pisum_contig149014Pisum_contig149014genetic_marker
Pisum_contig021980Pisum_contig021980genetic_marker
Pisum_contig021995Pisum_contig021995genetic_marker
Pisum_contig021996Pisum_contig021996genetic_marker
Pisum_contig022006Pisum_contig022006genetic_marker
Pisum_contig022007Pisum_contig022007genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States