A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig159020Pisum_contig159020genetic_marker
Pisum_contig165063Pisum_contig165063genetic_marker
Pisum_contig165065Pisum_contig165065genetic_marker
Pisum_contig119670Pisum_contig119670genetic_marker
Pisum_contig070099Pisum_contig070099genetic_marker
Pisum_contig102421Pisum_contig102421genetic_marker
Pisum_contig196672Pisum_contig196672genetic_marker
Pisum_contig175286Pisum_contig175286genetic_marker
Pisum_contig015647Pisum_contig015647genetic_marker
Pisum_contig015649Pisum_contig015649genetic_marker
Pisum_contig015662Pisum_contig015662genetic_marker
Pisum_contig062119Pisum_contig062119genetic_marker
Pisum_contig067868Pisum_contig067868genetic_marker
Pisum_contig072766Pisum_contig072766genetic_marker
Pisum_contig076016Pisum_contig076016genetic_marker
Pisum_contig076017Pisum_contig076017genetic_marker
Pisum_contig082106Pisum_contig082106genetic_marker
Pisum_contig082107Pisum_contig082107genetic_marker
Pisum_contig102425Pisum_contig102425genetic_marker
Pisum_contig104988Pisum_contig104988genetic_marker
Pisum_contig113449Pisum_contig113449genetic_marker
Pisum_contig122718Pisum_contig122718genetic_marker
Pisum_contig132320Pisum_contig132320genetic_marker
Pisum_contig159016Pisum_contig159016genetic_marker
Pisum_contig166206Pisum_contig166206genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States