A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig049547Pisum_contig049547genetic_marker
Pisum_contig049548Pisum_contig049548genetic_marker
Pisum_contig049551Pisum_contig049551genetic_marker
Pisum_contig049556Pisum_contig049556genetic_marker
Pisum_contig049559Pisum_contig049559genetic_marker
Pisum_contig049560Pisum_contig049560genetic_marker
Pisum_contig049561Pisum_contig049561genetic_marker
Pisum_contig049569Pisum_contig049569genetic_marker
Pisum_contig065342Pisum_contig065342genetic_marker
Pisum_contig065343Pisum_contig065343genetic_marker
Pisum_contig065344Pisum_contig065344genetic_marker
Pisum_contig065346Pisum_contig065346genetic_marker
Pisum_contig065352Pisum_contig065352genetic_marker
Pisum_contig071801Pisum_contig071801genetic_marker
Pisum_contig071805Pisum_contig071805genetic_marker
Pisum_contig071807Pisum_contig071807genetic_marker
Pisum_contig090858Pisum_contig090858genetic_marker
Pisum_contig090865Pisum_contig090865genetic_marker
Pisum_contig128412Pisum_contig128412genetic_marker
Pisum_contig128555Pisum_contig128555genetic_marker
Pisum_contig181274Pisum_contig181274genetic_marker
Pisum_contig181275Pisum_contig181275genetic_marker
Pisum_contig181276Pisum_contig181276genetic_marker
Pisum_contig184540Pisum_contig184540genetic_marker
Pisum_contig207917Pisum_contig207917genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States