A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig107071Pisum_contig107071genetic_marker
Pisum_contig104085Pisum_contig104085genetic_marker
Pisum_contig006909Pisum_contig006909genetic_marker
Pisum_contig017966Pisum_contig017966genetic_marker
Pisum_contig045559Pisum_contig045559genetic_marker
Pisum_contig045561Pisum_contig045561genetic_marker
Pisum_contig045562Pisum_contig045562genetic_marker
Pisum_contig045567Pisum_contig045567genetic_marker
Pisum_contig054833Pisum_contig054833genetic_marker
Pisum_contig076356Pisum_contig076356genetic_marker
Pisum_contig076357Pisum_contig076357genetic_marker
Pisum_contig076375Pisum_contig076375genetic_marker
Pisum_contig076379Pisum_contig076379genetic_marker
Pisum_contig077209Pisum_contig077209genetic_marker
Pisum_contig077217Pisum_contig077217genetic_marker
Pisum_contig077219Pisum_contig077219genetic_marker
Pisum_contig104091Pisum_contig104091genetic_marker
Pisum_contig104094Pisum_contig104094genetic_marker
Pisum_contig104095Pisum_contig104095genetic_marker
Pisum_contig104097Pisum_contig104097genetic_marker
Pisum_contig104099Pisum_contig104099genetic_marker
Pisum_contig104101Pisum_contig104101genetic_marker
Pisum_contig104102Pisum_contig104102genetic_marker
Pisum_contig104103Pisum_contig104103genetic_marker
Pisum_contig104104Pisum_contig104104genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States