A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig108535Pisum_contig108535genetic_marker
Pisum_contig108539Pisum_contig108539genetic_marker
Pisum_contig108545Pisum_contig108545genetic_marker
Pisum_contig108551Pisum_contig108551genetic_marker
Pisum_contig108554Pisum_contig108554genetic_marker
Pisum_contig111623Pisum_contig111623genetic_marker
Pisum_contig142865Pisum_contig142865genetic_marker
Pisum_contig158233Pisum_contig158233genetic_marker
Pisum_contig158241Pisum_contig158241genetic_marker
Pisum_contig158242Pisum_contig158242genetic_marker
Pisum_contig163984Pisum_contig163984genetic_marker
Pisum_contig163991Pisum_contig163991genetic_marker
Pisum_contig172182Pisum_contig172182genetic_marker
Pisum_contig185762Pisum_contig185762genetic_marker
Pisum_contig187496Pisum_contig187496genetic_marker
Pisum_contig189394Pisum_contig189394genetic_marker
Pisum_contig199619Pisum_contig199619genetic_marker
Pisum_contig202577Pisum_contig202577genetic_marker
Pisum_contig059612Pisum_contig059612genetic_marker
Pisum_contig059620Pisum_contig059620genetic_marker
Pisum_contig108538Pisum_contig108538genetic_marker
Pisum_contig108553Pisum_contig108553genetic_marker
Pisum_contig108556Pisum_contig108556genetic_marker
Pisum_contig176043Pisum_contig176043genetic_marker
Pisum_contig142876Pisum_contig142876genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States