A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig014529Pisum_contig014529genetic_marker
Pisum_contig059606Pisum_contig059606genetic_marker
Pisum_contig059616Pisum_contig059616genetic_marker
Pisum_contig082739Pisum_contig082739genetic_marker
Pisum_contig082746Pisum_contig082746genetic_marker
Pisum_contig082747Pisum_contig082747genetic_marker
Pisum_contig082751Pisum_contig082751genetic_marker
Pisum_contig097882Pisum_contig097882genetic_marker
Pisum_contig108552Pisum_contig108552genetic_marker
Pisum_contig111617Pisum_contig111617genetic_marker
Pisum_contig111626Pisum_contig111626genetic_marker
Pisum_contig111632Pisum_contig111632genetic_marker
Pisum_contig111637Pisum_contig111637genetic_marker
Pisum_contig142878Pisum_contig142878genetic_marker
Pisum_contig142990Pisum_contig142990genetic_marker
Pisum_contig142996Pisum_contig142996genetic_marker
Pisum_contig142997Pisum_contig142997genetic_marker
Pisum_contig169366Pisum_contig169366genetic_marker
Pisum_contig196257Pisum_contig196257genetic_marker
Pisum_contig142995Pisum_contig142995genetic_marker
Pisum_contig109482Pisum_contig109482genetic_marker
Pisum_contig001550Pisum_contig001550genetic_marker
Pisum_contig001555Pisum_contig001555genetic_marker
Pisum_contig097747Pisum_contig097747genetic_marker
Pisum_contig097750Pisum_contig097750genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States