A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig113843Pisum_contig113843genetic_marker
Pisum_contig007599Pisum_contig007599genetic_marker
Pisum_contig062978Pisum_contig062978genetic_marker
Pisum_contig062989Pisum_contig062989genetic_marker
Pisum_contig082406Pisum_contig082406genetic_marker
Pisum_contig096010Pisum_contig096010genetic_marker
Pisum_contig096016Pisum_contig096016genetic_marker
Pisum_contig099072Pisum_contig099072genetic_marker
Pisum_contig112119Pisum_contig112119genetic_marker
Pisum_contig180690Pisum_contig180690genetic_marker
Pisum_contig180693Pisum_contig180693genetic_marker
Pisum_contig062967Pisum_contig062967genetic_marker
Pisum_contig062969Pisum_contig062969genetic_marker
Pisum_contig062973Pisum_contig062973genetic_marker
Pisum_contig096011Pisum_contig096011genetic_marker
Pisum_contig178682Pisum_contig178682genetic_marker
Pisum_contig180696Pisum_contig180696genetic_marker
Pisum_contig180697Pisum_contig180697genetic_marker
Pisum_contig159940Pisum_contig159940genetic_marker
Pisum_contig062960Pisum_contig062960genetic_marker
Pisum_contig062966Pisum_contig062966genetic_marker
Pisum_contig062983Pisum_contig062983genetic_marker
Pisum_contig062985Pisum_contig062985genetic_marker
Pisum_contig062986Pisum_contig062986genetic_marker
Pisum_contig062987Pisum_contig062987genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States