A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig070259Pisum_contig070259genetic_marker
Pisum_contig070260Pisum_contig070260genetic_marker
Pisum_contig070262Pisum_contig070262genetic_marker
Pisum_contig070263Pisum_contig070263genetic_marker
Pisum_contig070265Pisum_contig070265genetic_marker
Pisum_contig070267Pisum_contig070267genetic_marker
Pisum_contig093686Pisum_contig093686genetic_marker
Pisum_contig093703Pisum_contig093703genetic_marker
Pisum_contig104253Pisum_contig104253genetic_marker
Pisum_contig104271Pisum_contig104271genetic_marker
Pisum_contig106560Pisum_contig106560genetic_marker
Pisum_contig106565Pisum_contig106565genetic_marker
Pisum_contig106568Pisum_contig106568genetic_marker
Pisum_contig117160Pisum_contig117160genetic_marker
Pisum_contig117164Pisum_contig117164genetic_marker
Pisum_contig117165Pisum_contig117165genetic_marker
Pisum_contig117168Pisum_contig117168genetic_marker
Pisum_contig117171Pisum_contig117171genetic_marker
Pisum_contig117174Pisum_contig117174genetic_marker
Pisum_contig139514Pisum_contig139514genetic_marker
Pisum_contig139516Pisum_contig139516genetic_marker
Pisum_contig139518Pisum_contig139518genetic_marker
Pisum_contig139519Pisum_contig139519genetic_marker
Pisum_contig139520Pisum_contig139520genetic_marker
Pisum_contig144380Pisum_contig144380genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States