A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig172722Pisum_contig172722genetic_marker
Pisum_contig122107Pisum_contig122107genetic_marker
Pisum_contig129725Pisum_contig129725genetic_marker
Pisum_contig129722Pisum_contig129722genetic_marker
Pisum_contig000471Pisum_contig000471genetic_marker
Pisum_contig000472Pisum_contig000472genetic_marker
Pisum_contig000473Pisum_contig000473genetic_marker
Pisum_contig000475Pisum_contig000475genetic_marker
Pisum_contig000479Pisum_contig000479genetic_marker
Pisum_contig000481Pisum_contig000481genetic_marker
Pisum_contig084106Pisum_contig084106genetic_marker
Pisum_contig106507Pisum_contig106507genetic_marker
Pisum_contig106520Pisum_contig106520genetic_marker
Pisum_contig122100Pisum_contig122100genetic_marker
Pisum_contig122101Pisum_contig122101genetic_marker
Pisum_contig122103Pisum_contig122103genetic_marker
Pisum_contig122105Pisum_contig122105genetic_marker
Pisum_contig122111Pisum_contig122111genetic_marker
Pisum_contig122112Pisum_contig122112genetic_marker
Pisum_contig122113Pisum_contig122113genetic_marker
Pisum_contig129730Pisum_contig129730genetic_marker
Pisum_contig169592Pisum_contig169592genetic_marker
Pisum_contig175748Pisum_contig175748genetic_marker
Pisum_contig182637Pisum_contig182637genetic_marker
Pisum_contig200196Pisum_contig200196genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States