A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig195265Pisum_contig195265genetic_marker
Pisum_contig195266Pisum_contig195266genetic_marker
Pisum_contig039266Pisum_contig039266genetic_marker
Pisum_contig000442Pisum_contig000442genetic_marker
Pisum_contig000452Pisum_contig000452genetic_marker
Pisum_contig000459Pisum_contig000459genetic_marker
Pisum_contig018290Pisum_contig018290genetic_marker
Pisum_contig039254Pisum_contig039254genetic_marker
Pisum_contig039255Pisum_contig039255genetic_marker
Pisum_contig039256Pisum_contig039256genetic_marker
Pisum_contig039258Pisum_contig039258genetic_marker
Pisum_contig039260Pisum_contig039260genetic_marker
Pisum_contig039261Pisum_contig039261genetic_marker
Pisum_contig039265Pisum_contig039265genetic_marker
Pisum_contig039270Pisum_contig039270genetic_marker
Pisum_contig039271Pisum_contig039271genetic_marker
Pisum_contig039273Pisum_contig039273genetic_marker
Pisum_contig039274Pisum_contig039274genetic_marker
Pisum_contig039282Pisum_contig039282genetic_marker
Pisum_contig039284Pisum_contig039284genetic_marker
Pisum_contig056316Pisum_contig056316genetic_marker
Pisum_contig092176Pisum_contig092176genetic_marker
Pisum_contig098828Pisum_contig098828genetic_marker
Pisum_contig107948Pisum_contig107948genetic_marker
Pisum_contig110032Pisum_contig110032genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States