A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig131110Pisum_contig131110genetic_marker
Pisum_contig131119Pisum_contig131119genetic_marker
Pisum_contig131122Pisum_contig131122genetic_marker
Pisum_contig131123Pisum_contig131123genetic_marker
Pisum_contig145095Pisum_contig145095genetic_marker
Pisum_contig145098Pisum_contig145098genetic_marker
Pisum_contig145099Pisum_contig145099genetic_marker
Pisum_contig152503Pisum_contig152503genetic_marker
Pisum_contig152506Pisum_contig152506genetic_marker
Pisum_contig152508Pisum_contig152508genetic_marker
Pisum_contig152510Pisum_contig152510genetic_marker
Pisum_contig152513Pisum_contig152513genetic_marker
Pisum_contig152516Pisum_contig152516genetic_marker
Pisum_contig164372Pisum_contig164372genetic_marker
Pisum_contig170979Pisum_contig170979genetic_marker
Pisum_contig170980Pisum_contig170980genetic_marker
Pisum_contig170982Pisum_contig170982genetic_marker
Pisum_contig193523Pisum_contig193523genetic_marker
Pisum_contig085245Pisum_contig085245genetic_marker
Pisum_contig085260Pisum_contig085260genetic_marker
Pisum_contig152507Pisum_contig152507genetic_marker
Pisum_contig170984Pisum_contig170984genetic_marker
Pisum_contig114163Pisum_contig114163genetic_marker
Pisum_contig130672Pisum_contig130672genetic_marker
Pisum_contig145097Pisum_contig145097genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States