A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig028489Pisum_contig028489genetic_marker
Pisum_contig028493Pisum_contig028493genetic_marker
Pisum_contig028508Pisum_contig028508genetic_marker
Pisum_contig059493Pisum_contig059493genetic_marker
Pisum_contig059496Pisum_contig059496genetic_marker
Pisum_contig059497Pisum_contig059497genetic_marker
Pisum_contig059500Pisum_contig059500genetic_marker
Pisum_contig059503Pisum_contig059503genetic_marker
Pisum_contig059511Pisum_contig059511genetic_marker
Pisum_contig059514Pisum_contig059514genetic_marker
Pisum_contig059519Pisum_contig059519genetic_marker
Pisum_contig096213Pisum_contig096213genetic_marker
Pisum_contig114156Pisum_contig114156genetic_marker
Pisum_contig128200Pisum_contig128200genetic_marker
Pisum_contig144118Pisum_contig144118genetic_marker
Pisum_contig146069Pisum_contig146069genetic_marker
Pisum_contig158747Pisum_contig158747genetic_marker
Pisum_contig169034Pisum_contig169034genetic_marker
Pisum_contig181894Pisum_contig181894genetic_marker
Pisum_contig185129Pisum_contig185129genetic_marker
Pisum_contig217575Pisum_contig217575genetic_marker
Pisum_contig016407Pisum_contig016407genetic_marker
Pisum_contig028462Pisum_contig028462genetic_marker
Pisum_contig148289Pisum_contig148289genetic_marker
Pisum_contig158752Pisum_contig158752genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States