A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig024388Pisum_contig024388genetic_marker
Pisum_contig024394Pisum_contig024394genetic_marker
Pisum_contig081393Pisum_contig081393genetic_marker
Pisum_contig082199Pisum_contig082199genetic_marker
Pisum_contig116533Pisum_contig116533genetic_marker
Pisum_contig127931Pisum_contig127931genetic_marker
Pisum_contig127940Pisum_contig127940genetic_marker
Pisum_contig127942Pisum_contig127942genetic_marker
Pisum_contig127943Pisum_contig127943genetic_marker
Pisum_contig127944Pisum_contig127944genetic_marker
Pisum_contig139589Pisum_contig139589genetic_marker
Pisum_contig152711Pisum_contig152711genetic_marker
Pisum_contig168911Pisum_contig168911genetic_marker
Pisum_contig187362Pisum_contig187362genetic_marker
Pisum_contig187367Pisum_contig187367genetic_marker
Pisum_contig201508Pisum_contig201508genetic_marker
Pisum_contig081400Pisum_contig081400genetic_marker
Pisum_contig001468Pisum_contig001468genetic_marker
Pisum_contig001471Pisum_contig001471genetic_marker
Pisum_contig001476Pisum_contig001476genetic_marker
Pisum_contig001490Pisum_contig001490genetic_marker
Pisum_contig001496Pisum_contig001496genetic_marker
Pisum_contig001507Pisum_contig001507genetic_marker
Pisum_contig001527Pisum_contig001527genetic_marker
Pisum_contig001530Pisum_contig001530genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States