A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig168917Pisum_contig168917genetic_marker
Pisum_contig168919Pisum_contig168919genetic_marker
Pisum_contig187358Pisum_contig187358genetic_marker
Pisum_contig188990Pisum_contig188990genetic_marker
Pisum_contig188991Pisum_contig188991genetic_marker
Pisum_contig206689Pisum_contig206689genetic_marker
Pisum_contig207671Pisum_contig207671genetic_marker
Pisum_contig211806Pisum_contig211806genetic_marker
Pisum_contig001482Pisum_contig001482genetic_marker
Pisum_contig001489Pisum_contig001489genetic_marker
Pisum_contig024393Pisum_contig024393genetic_marker
Pisum_contig024397Pisum_contig024397genetic_marker
Pisum_contig036911Pisum_contig036911genetic_marker
Pisum_contig036912Pisum_contig036912genetic_marker
Pisum_contig036918Pisum_contig036918genetic_marker
Pisum_contig053874Pisum_contig053874genetic_marker
Pisum_contig063433Pisum_contig063433genetic_marker
Pisum_contig083809Pisum_contig083809genetic_marker
Pisum_contig146690Pisum_contig146690genetic_marker
Pisum_contig082195Pisum_contig082195genetic_marker
Pisum_contig001466Pisum_contig001466genetic_marker
Pisum_contig001470Pisum_contig001470genetic_marker
Pisum_contig001472Pisum_contig001472genetic_marker
Pisum_contig001475Pisum_contig001475genetic_marker
Pisum_contig001485Pisum_contig001485genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States