A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig081395Pisum_contig081395genetic_marker
Pisum_contig081396Pisum_contig081396genetic_marker
Pisum_contig081398Pisum_contig081398genetic_marker
Pisum_contig081402Pisum_contig081402genetic_marker
Pisum_contig081403Pisum_contig081403genetic_marker
Pisum_contig081406Pisum_contig081406genetic_marker
Pisum_contig081739Pisum_contig081739genetic_marker
Pisum_contig082176Pisum_contig082176genetic_marker
Pisum_contig082177Pisum_contig082177genetic_marker
Pisum_contig082178Pisum_contig082178genetic_marker
Pisum_contig082181Pisum_contig082181genetic_marker
Pisum_contig082183Pisum_contig082183genetic_marker
Pisum_contig082184Pisum_contig082184genetic_marker
Pisum_contig082185Pisum_contig082185genetic_marker
Pisum_contig082186Pisum_contig082186genetic_marker
Pisum_contig082187Pisum_contig082187genetic_marker
Pisum_contig082188Pisum_contig082188genetic_marker
Pisum_contig082189Pisum_contig082189genetic_marker
Pisum_contig082191Pisum_contig082191genetic_marker
Pisum_contig082194Pisum_contig082194genetic_marker
Pisum_contig082198Pisum_contig082198genetic_marker
Pisum_contig082201Pisum_contig082201genetic_marker
Pisum_contig083799Pisum_contig083799genetic_marker
Pisum_contig083802Pisum_contig083802genetic_marker
Pisum_contig083803Pisum_contig083803genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States