A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig116557Pisum_contig116557genetic_marker
Pisum_contig124470Pisum_contig124470genetic_marker
Pisum_contig124474Pisum_contig124474genetic_marker
Pisum_contig124485Pisum_contig124485genetic_marker
Pisum_contig138063Pisum_contig138063genetic_marker
Pisum_contig138064Pisum_contig138064genetic_marker
Pisum_contig138065Pisum_contig138065genetic_marker
Pisum_contig138067Pisum_contig138067genetic_marker
Pisum_contig138072Pisum_contig138072genetic_marker
Pisum_contig138075Pisum_contig138075genetic_marker
Pisum_contig139590Pisum_contig139590genetic_marker
Pisum_contig139596Pisum_contig139596genetic_marker
Pisum_contig139599Pisum_contig139599genetic_marker
Pisum_contig146692Pisum_contig146692genetic_marker
Pisum_contig146693Pisum_contig146693genetic_marker
Pisum_contig146703Pisum_contig146703genetic_marker
Pisum_contig146707Pisum_contig146707genetic_marker
Pisum_contig150685Pisum_contig150685genetic_marker
Pisum_contig151202Pisum_contig151202genetic_marker
Pisum_contig151204Pisum_contig151204genetic_marker
Pisum_contig151207Pisum_contig151207genetic_marker
Pisum_contig151212Pisum_contig151212genetic_marker
Pisum_contig154482Pisum_contig154482genetic_marker
Pisum_contig154484Pisum_contig154484genetic_marker
Pisum_contig168914Pisum_contig168914genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States