A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig092670Pisum_contig092670genetic_marker
Pisum_contig092677Pisum_contig092677genetic_marker
Pisum_contig092679Pisum_contig092679genetic_marker
Pisum_contig168798Pisum_contig168798genetic_marker
Pisum_contig168799Pisum_contig168799genetic_marker
Pisum_contig168800Pisum_contig168800genetic_marker
Pisum_contig169799Pisum_contig169799genetic_marker
Pisum_contig175010Pisum_contig175010genetic_marker
Pisum_contig180145Pisum_contig180145genetic_marker
Pisum_contig184488Pisum_contig184488genetic_marker
Pisum_contig184489Pisum_contig184489genetic_marker
Pisum_contig006563Pisum_contig006563genetic_marker
Pisum_contig086623Pisum_contig086623genetic_marker
Pisum_contig092649Pisum_contig092649genetic_marker
Pisum_contig092650Pisum_contig092650genetic_marker
Pisum_contig092675Pisum_contig092675genetic_marker
Pisum_contig092678Pisum_contig092678genetic_marker
Pisum_contig197154Pisum_contig197154genetic_marker
Pisum_contig006542Pisum_contig006542genetic_marker
Pisum_contig006543Pisum_contig006543genetic_marker
Pisum_contig006544Pisum_contig006544genetic_marker
Pisum_contig006545Pisum_contig006545genetic_marker
Pisum_contig006549Pisum_contig006549genetic_marker
Pisum_contig006553Pisum_contig006553genetic_marker
Pisum_contig014599Pisum_contig014599genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States